Table 3

List of genes predicted in BAC clones and confirmed by annotation to Swiss-Prot, nr and EST collections with e-value cut-off 1e-50
FGENESH predictions Alignment e-values
BAC clone, accession Gene no. Annotations by sequence similarity est_other nr Swiss-Prot
004G15, [EMBL:HE804808] 1 iron-sulfur assembly protein IscA-like 1 2.0E-54 1.9E-49 7.0E-21
2 cell division protein ftsZ homolog 2-1 0 0 0
3 unknown gene 1.7E-63 2.7E-62 -
4 probable cytosolic iron-sulfur assembly protein 0 0 1.7E-110
5 cytochrome b-c1 complex subunit 9-like 3.4E-75 2.2E-53 2.4E-30
6 iron-sulfur assembly protein IscA-like 1.3E-67 6.5E-60 1.4E-29
7 unknown gene 6.0E-105 2.5E-98 -
8 signal recognition particle 54 kDa protein 0 0 0
9 small nuclear ribonucleoprotein G-like 1.1E-69 1.4E-69 7.6E-32
10 unknown gene 4.1E-103 0 -
11 125 kDa kinesin-related protein-like 2.3E-180 0 0
13 domain-containing protein 90-like 0 9.4E-173 2.1E-70
14 vacuolar protein sorting-associated protein 55 3.9E-147 6.1E-146 7.2E-38
15 N-acetylglucosaminyltransferase SPINDLY-like 0 0 3.9E-177
055L12, [EMBL:HE804809] 11 GRAS family transcription factor 0 0 2.3E-170
13 aldehyde dehydrogenase family 3 member F1 3.2E-77 4.4E-64 4.1E-20
057J20, [EMBL:HE804810] 6 unknown gene 8.6E-78 7.3E-80 -
7 formimidoyltransferase-cyclodeaminase-like 1.7E-176 2.2E-176 1.0E-06
8 probable galacturonosyltransferase 10 0 0 0
9 protein TIC 20-IV, chloroplastic, precursor 1.4E-164 0 1.1E-64
13 vacuolar protein sorting-associated protein 18 0 0 2.3E-155
14 unknown gene 6.4E-60 1.0E-26 -
16 unknown gene 3.2E-53 4.9E-52 -
067H16, [EMBL:HE804811] 2 unknown gene 2.4E-116 8.7E-117 -
3 unknown gene 0 8.1E-160 -
4 glucan endo-1,3-beta-glucosidase 5-like 0 0 0
5 endonuclease V 1.9E-117 5.3E-113 3.5E-67
7 sialyltransferase-like protein 0 0 3.8E-12
8 auxin-induced protein 6B 1.9E-121 1.4E-130 1.1E-17
080B11, [EMBL:HE804812] 1 50S ribosomal protein L35 7.2E-121 7.9E-90 -
2 unknown gene 0 0 -
3 myb family transcription factor APL-like 7.6E-167 0 3.5E-43
4 isoflavone reductase homolog 0 0 0
5 unknown gene 6.2E-111 7.9E-111 -
6 unknown gene 0 0 -
7 transmembrane protein 45B 0 0 2.4E-08
8 MOB kinase activator-like 1 0 0 1.1E-148
9 unknown gene 2.2E-51 6.6E-53 -
10 histone-lysine N-methyltransferase ASHR2-like 5.7E-119 1.7E-177 2.5E-103
14 protein BREVIS RADIX-like 0 0 1.3E-129

Książkiewicz et al.

Książkiewicz et al. BMC Genomics 2013 14:79   doi:10.1186/1471-2164-14-79

Open Data