Table 1

Putative functions assigned to Xff 4834-R CDSs according to Riley classification [35]
Main functional class1 Gene ontology number (GO) Number of CDSs
1. Metabolism GO:0008152 1,248
1.1. Carbon compounds utilization 142
1.2. Macromolecules degradation GO:0009057 151
1.3 Energy metabolism (carbon) GO:0015980 83
1.4 Energy production/transport 57
1.5. Building block biosynthesis 260
1.6. Macromolecules biosynthesis GO:0009059 214
1.7. Central intermediary metabolism 82
1.8. Metabolism of other compounds 20
2. Information transfer 371
3. Regulation GO:0050789 360
4. Transport GO:0005215, GO:0006810 489
5. Cell processes GO:0009987 186
6. Cell structure GO:0005575 34
7. Location of gene products GO:0005575 199
8. Extrachromosomal 136
9. DNA sites
10. Cryptic genes 1,060

1 Only one putative functional class was assigned per CDS.

Darrasse et al.

Darrasse et al. BMC Genomics 2013 14:761   doi:10.1186/1471-2164-14-761

Open Data