Table 1

Statistics of categorization and abundance of DGE tags
Summary B. rapa B. oleracea B. napus-F1 B. napus-F2 B. napus-F3 B. napus-F4 B. napus-N
Raw Data Total 6178564 6059222 6155227 6092805 6142098 5938583 5964594
Raw Data Distinct Tag 293575 243895 331406 275597 284202 272986 269285
Clean tag Total number 6018254 5930726 6022170 5950123 5991210 5798939 5823113
Clean tag Distinct Tag number 133499 116771 199428 134403 134721 134857 128967
Tag Mapping to Gene Total number 1964909 1747843 3025405 2354059 1652733 2295897 2253347
Tag Mapping to Gene Distinct Tag number 44267 36220 88270 49781 42613 51122 45358
Unambiguous Tag Mapping to Gene Total number 1679848 1475050 2495411 2016182 1415736 1971591 1924944
Unambiguous Tag Mapping to Gene Total % of clean tag 27.91% 24.87% 41.44% 33.88% 23.63% 34.00% 33.06%
Unambiguous Tag Mapping to Gene Distinct Tag number 39414 31933 79648 44456 37996 45762 40561
Unambiguous Tag Mapping to Gene Distinct Tag % of clean tag 29.52% 27.35% 39.94% 33.08% 28.20% 33.93% 31.45%
Tag-mapped Genes number 19023 18547 24383 20659 18881 20692 19955
Tag-mapped Genes % of ref genes 46.20% 45.05% 59.22% 50.17% 45.86% 50.26% 48.47%
Unambiguous Tag-mapped Genes number 16574 15970 22059 18155 16479 18196 17448
Unambiguous Tag-mapped Genes % of ref genes 40.25% 38.79% 53.58% 44.09% 40.02% 44.19% 42.38%
Mapping to Genome Total number 2437918 2105332 1776978 2290544 2658991 2232572 2164464
Mapping to Genome Total % of clean tag 40.51% 35.50% 29.51% 38.50% 44.38% 38.50% 37.17%
Mapping to Genome Distinct Tag number 44076 30703 49898 42334 45680 42590 40689
Mapping to Genome Distinct Tag % of clean tag 33.02% 26.29% 25.02% 31.50% 33.91% 31.58% 31.55%
Unknown Tag Total number 1615427 2077551 1219787 1305520 1679486 1270470 1405302
Unknown Tag Total % of clean tag 26.84% 35.03% 20.25% 21.94% 28.03% 21.91% 24.13%
Unknown Tag Distinct Tag number 45156 49848 61260 42288 46428 41145 42920
Unknown Tag Distinct Tag % of clean tag 33.82% 42.69% 30.72% 31.46% 34.46% 30.51% 33.28%

Clean tags are tags after filtering dirty tags from raw data. Distinct tags are different kinds of tags and unambiguous tags are the reminder clean tags after removing tags mapped to reference genome.

Jiang et al.

Jiang et al. BMC Genomics 2013 14:72   doi:10.1186/1471-2164-14-72

Open Data