Additional file 7: S7.
List of differentially expressed genes in the early generations of resynthesized B. napus. DEGs between pairs of libraries were shown (Br vs. Bn-F1, Bo vs. Bn-F1, Bn-F1 vs. Bn-F2, Bn-F1 vs. Bn-F3, Bn-F1 vs. Bn-F4, Bn-N vs. Bn-F1. ‘A’ was the control and ‘B’ was experimental group in ‘A vs. B’). TPM: transcript copies per million tags. Raw intensity: the total number of tags sequenced for each gene. FDR: false discovery rate. We used FDR < 0.001 and the absolute value of log2Ratio ≤1 as the threshold to judge the significance of gene expression difference. In order to calculate the log2Ratio and FDR, we used TPM value of 0.001 instead of 0 for genes that do not express in one sample.
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Jiang et al. BMC Genomics 2013 14:72 doi:10.1186/1471-2164-14-72