Email updates

Keep up to date with the latest news and content from BMC Genomics and BioMed Central.

Open Access Highly Accessed Research article

Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish

Liandong Yang12, Ming Zou12, Beide Fu12 and Shunping He1*

Author Affiliations

1 The Key Laboratory of Aquatic Biodiversity and Conservation of Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan, Hubei 430072, People’s Republic of China

2 University of Chinese Academy of Sciences, Beijing 100039, People’s Republic of China

For all author emails, please log on.

BMC Genomics 2013, 14:65  doi:10.1186/1471-2164-14-65

Published: 31 January 2013

Additional files

Additional file 1: Table S2:

List of orphan genes identified in the study.

Format: XLS Size: 25KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2: Table S3:

List of conserved teleosts specific genes.

Format: XLS Size: 35KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 3: Table S4:

Lineage-specific genes with paralogs that are conserved outside the taxa.

Format: XLS Size: 80KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 4: Table S5:

Lineage-specific genes with paralogs that are not conserved outside the taxa.

Format: XLS Size: 41KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 5: Figure S1:

Proportion of genes having second (A), third (B), and fourth (C) highest expression levels in each developmental stage.

Format: PNG Size: 26KB Download file

Open Data

Additional file 6: Figure S2:

Four genes with special expression patterns.

Format: PNG Size: 14KB Download file

Open Data

Additional file 7: Table S6:

List of the number of unique mapped reads and RPKM for both orphan genes and CTSGs expressed at different developmental stages and different organs.

Format: XLS Size: 156KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 8: Table S7:

The information of the primers for RT-PCR.

Format: XLS Size: 18KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 9: Figure S3:

The results of RT-PCR. The products of RT-PCR were sorted by their length.

Format: PNG Size: 66KB Download file

Open Data

Additional file 10: Table S1:

List of the genomes and proteomes used in this study.

Format: XLS Size: 24KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data