Table 3

Classification of allele-specific expression (ASE) SNPs in response to Marek’s disease virus (MDV) infection in common between broilers and layers at the nucleotide position and gene level
SNP type Nucleotide-level match Gene-level match
SNPs Genes Genes
Downstream 12 11 86
Exonic 18 18 231
Exonic Splicing 0 0 0
Intergenic 25 25 301
Intronic 6 6 117
ncRNA_exonic 0 0 0
Splicing 0 0 0
Upstream 1 1 9
Upstream:Downstream 0 0 2
UTR’3 9 9 101
UTR’5 1 1 3
UTR’3: UTR’5 0 0 0
Total 72 71 850

Perumbakkam et al.

Perumbakkam et al. BMC Genomics 2013 14:64   doi:10.1186/1471-2164-14-64

Open Data