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Open Access Highly Accessed Research article

Complete genome sequence and comparative analysis of Acetobacter pasteurianus 386B, a strain well-adapted to the cocoa bean fermentation ecosystem

Koen Illeghems, Luc De Vuyst and Stefan Weckx*

Author Affiliations

Research Group of Industrial Microbiology and Food Biotechnology (IMDO), Faculty of Sciences and Bio-engineering Sciences, Vrije Universiteit Brussel, Pleinlaan 2, Brussels B-1050, Belgium

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BMC Genomics 2013, 14:526  doi:10.1186/1471-2164-14-526

Published: 1 August 2013

Additional files

Additional file 1:

Prophage- and transposon-related genes of Acetobacter pasteurianus 386B. Homologues of the genes involved are shown for A. pasteurianus IFO 3283, Ga. diazotrophicus Pal5, and G. oxydans 621H.

Format: XLSX Size: 13KB Download file

Open Data

Additional file 2:

Overview of genes in Acetobacter pasteurianus 386B truncated by transposons in A. pasteurianus IFO 3283. Overview of genomic positions of the homologues of truncated gene fragments of A. pasteurianus IFO 3283 in A. pasteurianus 386B.

Format: XLSX Size: 12KB Download file

Open Data

Additional file 3:

Strain-specific genes of Acetobacter pasteurianus 386B. Unique genes were identified by comparative analysis of five available genome sequences of A. pasteurianus strains using EDGAR.

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Open Data

Additional file 4:

PCR assay for endopolygalacturonase gene. Assays were performed on selected A. pasteurianus strains, originating from spontaneous cocoa bean fermentations.

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Open Data

Additional file 5:

Uncharacterized oxidoreductases of Acetobacter pasteurianus 386B. Features of the genes that could be annotated are listed. The oxidoreductases are classified according to their protein family.

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Open Data

Additional file 6:

Genes of Acetobacter pasteurianus 386B coding for membrane-bound oxidoreductases with unknown specific function. Homologues of the genes involved are shown for A. pasteurianus IFO 3283, Ga. diazotrophicus Pal5, and G. oxydans 621H.

Format: XLSX Size: 10KB Download file

Open Data

Additional file 7:

Genes of Acetobacter pasteurianus 386B involved in thermotolerance. List of homologous genes between A. pasteurianus 386B and A. tropicalis NBRC 101654, and between A. pasteurianus 386B and A. pasteurianus NBRC 101655.

Format: XLSX Size: 11KB Download file

Open Data