Table 3 |
|
| A. carolinensis genes that are unique to the ASU annotation and have vertebrate orthologues | |
| Gene | ASU |
| Annotated genes | 2,928 |
| Annotated transcript isoforms | 3,612 |
| Annotated isoforms/gene | 1.23 |
| Transcript | |
| All transcript isoforms | 3,612 |
| Transcripts with start & stop codons | 2,698 |
| Transcripts missing start or stop codon | 914 |
| Single exon transcripts | 301 |
| Transcript N50 length | 2,157 |
| Average coding sequence length | 1,182 |
| Exon | |
| Total number of exons | 18,921 |
| Exons with start with codon | 2,468 |
| Exons without start or stop codon | 13,901 |
| Exons with stop codon | 2,300 |
| Exons/annotated transcript | 6.35 |
| Average exon length | 188 |
| Total exon length | 3,569,265 |
| 3' UTR | |
| Total transcripts with 3'UTR | 1,323 |
| Average length of transcripts with 3'UTR | 761.2 |
| Total 3'UTR sequence length | 1,007,040 |
| 5' UTR | |
| Total transcripts with 5'UTR | 1,816 |
| Average length of transcripts with 5'UTR | 238.7 |
| Total 5'UTR sequence length | 433,533 |
| Intron | |
| Total number of introns | 15,835 |
| Average intron length | 5,304 |
| Total intron sequence length | 83,999,254 |
Eckalbar et al. BMC Genomics 2013 14:49 doi:10.1186/1471-2164-14-49
