Table 12

Number of putative ABC transporter genes in each ABC transporter family
ABC transporter family No. of putative ABC transporter genes in DBM No. of ABC transporter genes in Bombyx mori
DS1-UBH DS2-UBH DS2-PTB
ABCA 8 7 7 9
ABCB 18 11 11 9
ABCC 20 15 15 15
ABCD 2 2 2 2
ABCE 1 1 1 1
ABCF 3 3 3 3
ABCG 15 12 12 12
ABCH 3 3 3 2
Total 70 54 54 53

The number of putative ABC transporter genes in each ABC transporter family in DBM was estimated using two sets of nucleotide-binding domain (Pfam ID: PF00005) sequences (DS1 and DS2). UBH based classification was performed for DS1 (DS1-UBH) and DS2 (DS2-UBH), respectively. Phylogenetic tree-based classification was performed for DS2 (DS2-PTB). The number of ABC transporter genes in Bombyx mori was obtained from [65].

Jouraku et al.

Jouraku et al. BMC Genomics 2013 14:464   doi:10.1186/1471-2164-14-464

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