Table 1

Characterisation of 103 T. urticae ABC proteins
Subfamily Tetur ID1 Name Length(AA) Strand Exons Topology2 N-Glc3 O-Glc4
A (9) tetur01g00580 TuABCA-01 1659 - 5 (6TM-NBD)2 5
tetur01g15090 TuABCA-02 1639 + 4 (7/8TM-NBD)2 2 1
tetur11g05030 TuABCA-03 1670 - 5 (5/6TM-NBD)2 3
tetur11g05040 TuABCA-04 1670 - 5 (6TM-NBD)2 2
tetur11g05200 TuABCA-05 1672 - 5 (6TM-NBD)2 2
tetur15g01990 TuABCA-06 1666 + 5 (6TM -NBD)2 3
tetur25g01640 TuABCA-07 2302 + 20 (6TM-NBD)2 8
tetur27g01890 TuABCA-08 2082 + 2 (7/4TM-NBD)2 5 27
tetur30g01960 TuABCA-09 1651 - 5 (6/8TM-NBD)2 3
B (4) tetur11g04030 TuABCB-01 1294 + 15 (6TM-NBD)2 4
tetur11g04040 TuABCB-02 1292 + 16 (6TM-NBD)2 4
tetur17g02000 TuABCB-03 688 - 8 4TM-NBD 1
tetur32g01330 TuABCB-04 656 - 8 5TM-NBD 3
C (39) tetur01g07880 TuABCC-01 1507 + 11 5TM-(5TM-NBD)2 1 2
tetur01g10390 TuABCC-02 1529 + 11 7TM-(5TM-NBD)2
tetur01g15310 TuABCC-03 1299 + 15 (5/6TM-NBD)2 5 1
tetur01g15330 TuABCC-04 1328 + 14 (7TM-NBD)2 5
tetur01g15340 TuABCC-05 1338 + 14 (8/7TM-NBD)2 3
tetur03g02240 TuABCC-06 1375 - 12 (6TM-NBD)2 2
tetur03g07460 TuABCC-07 1481 - 11 6TM-(5TM-NBD)2 2
tetur03g07490 TuABCC-08 1483 - 11 6TM-(5TM-NBD)2 1
tetur03g07840 TuABCC-09 1457 - 5 5TM-(6TM-NBD)2 1
tetur03g09800 TuABCC-10 1490 + 11 6TM-(5TM-NBD)2 1
tetur03g09880 TuABCC-11 1495 + 11 4TM-(5TM-NBD)2 1 1
tetur04g04360 TuABCC-12 1522 + 5 8TM-(5TM-NBD)2 3
tetur04g05540 TuABCC-13 1503 + 8 6TM-(5TM-NBD)2 5
tetur04g07860 TuABCC-14 1501 - 8 7TM-(4TM-NBD)2 3
tetur04g07910 TuABCC-15 1493 - 8 6TM-(5TM-NBD)2 2
tetur05g01110 TuABCC-16 1522 - 11 4TM-(5TM-NBD)2 6 1
tetur05g04300 TuABCC-17 1490 + 8 5TM-(6TM-NBD)2 6 2
tetur06g00360 TuABCC-18 1516 + 11 6TM-(5TM-NBD)2 4 1
tetur06g03510 TuABCC-19 1343 + 6 (6TM-NBD)2 2
tetur06g03560 TuABCC-20 1339 + 6 (5/7TM-NBD)2 2
tetur07g04290 TuABCC-21 1324 - 5 (6TM-NBD)2 1
tetur07g04410 TuABCC-22 1324 + 5 (6TM-NBD)2 1
tetur09g00580 TuABCC-23 1506 + 8 7TM-(6TM-NBD)2 2
tetur09g00590 TuABCC-24 1496 + 9 6TM-(6TM-NBD)2 1
tetur09g04610 TuABCC-25 1521 + 8 7TM-(6TM-NBD)2 4 1
tetur09g04620 TuABCC-26 1501 + 8 6TM-(5TM-NBD)2 5
tetur11g02060 TuABCC-27 1499 - 11 4TM-(6TM-NBD)2 1
tetur11g02120 TuABCC-28 1492 + 11 6TM-(4TM-NBD)2 2 1
tetur11g05990 TuABCC-29 1683 - 15 5TM-(6TM-NBD)2 6
tetur14g02290 TuABCC-30 1309 - 16 (5/7TM-NBD)2 4
tetur14g02300 TuABCC-31 1312 - 16 (5/7TM-NBD)2 5
tetur14g02310 TuABCC-32 1308 - 16 (6/7TM-NBD)2 3 1
tetur14g02320 TuABCC-33 1309 - 16 (7TM-NBD)2 2 1
tetur14g02330 TuABCC-34 1309 - 16 (5/7TM-NBD)2 2
tetur16g03480 TuABCC-35 1513 - 11 6TM-(5TM-NBD)2 2 1
tetur23g02452 TuABCC-36 1344 - 6 (8/6TM-NBD)2 2
tetur25g01780 TuABCC-37 1525 + 12 5TM-(5TM-NBD)2
tetur28g01950 TuABCC-38 1287 + 7 (6TM-NBD)2 3
tetur40g00010 TuABCC-39 1490 + 11 5TM-(5TM-NBD)2 1
D (2) tetur05g06640 TuABCD-01 829 + 4 5TM-NBD 2 1
tetur35g01360 TuABCD-02 656 + 5 5TM-NBD 4
E (1) tetur30g01400 TuABCE-01 614 - 2 NBD-NBD
F (3) tetur20g02610 TuABCF-01 612 + 4 NBD-NBD 3
tetur29g00620 TuABCF-02 584 + 1 NBD-NBD 3
tetur32g00490 TuABCF-03 718 - 4 NBD-NBD 4
G (23) tetur01g16280 TuABCG-01 915 - 6 NBD-7TM 1 1
tetur01g16290 TuABCG-02 643 + 3 NBD-6TM 1
tetur02g11270 TuABCG-03 689 + 11 NBD-6TM 1
tetur02g11400 TuABCG-04 811 - 2 NBD-6TM 3 1
tetur02g13710 TuABCG-05 810 - 2 NBD-6TM 3
tetur03g04350 TuABCG-06 687 - 2 NBD-6TM 2
tetur04g04550 TuABCG-07 720 + 2 NBD-6TM 3 1
tetur05g05440 TuABCG-08 721 + 2 NBD-8TM 1 1
tetur06g05430 TuABCG-09 646 - 12 NBD-7TM 3
tetur09g01930 TuABCG-10 685 + 9 NBD-5TM 2
tetur09g01950 TuABCG-11 682 + 9 NBD-5TM 1
tetur09g01960 TuABCG-12 683 + 9 NBD-5TM 3
tetur09g01970 TuABCG-13 687 + 9 NBD-6TM 3
tetur09g01980 TuABCG-14 680 + 9 NBD-6TM 4
tetur09g01990 TuABCG-15 687 + 9 NBD-6TM 2 4
tetur09g02000 TuABCG-16 682 + 9 NBD-7TM 3
tetur11g00520 TuABCG-17 792 - 1 NBD-8TM 2 3
tetur11g01800 TuABCG-18 790 - 1 NBD-8TM 2 3
tetur17g02510 TuABCG-19 832 - 4 NBD-4TM 2 1
tetur17g03970 TuABCG-20 700 - 2 NBD-8TM 5
tetur19g01160 TuABCG-21 775 - 1 NBD-7TM 4 2
tetur33g01719 TuABCG-22 760 + 1 NBD-6TM 1
tetur37g01090 TuABCG-23 779 - 1 NBD-7TM 1 14
H (22) tetur01g03530 TuABCH-01 827 + 1 NBD-8TM 6 7
tetur01g05940 TuABCH-02 766 - 6 NBD-6TM 2 2
tetur01g05970 TuABCH-03 734 - 6 NBD-6TM 1 1
tetur03g03080 TuABCH-04 767 - 2 NBD-8TM 3
tetur03g05300 TuABCH-05 738 - 1 NBD-6TM 1
tetur04g06390 TuABCH-06 707 + 1 NBD-7TM 2 1
tetur05g05000 TuABCH-07 713 + 1 NBD-7TM 3
tetur07g05200 TuABCH-08 764 - 4 NBD-6TM
tetur12g03340 TuABCH-09 744 - 1 NBD-5TM 1
tetur12g03910 TuABCH-10 713 + 1 NBD-7TM 3
tetur13g02010 TuABCH-11 703 - 1 NBD-8TM 2 1
tetur13g02060 TuABCH-12 723 - 1 NBD-7TM 3
tetur18g00230 TuABCH-13 735 - 2 NBD-8TM 4 20
tetur19g01780 TuABCH-14 692 - 1 NBD-7TM 5 2
tetur21g00940 TuABCH-15 716 + 2 NBD-6TM 1 1
tetur26g02620 TuABCH-16 708 - 10 NBD-7TM 2 4
tetur28g00780 TuABCH-17 726 - 1 NBD-8TM 1 2
tetur28g00870 TuABCH-18 720 + 1 NBD-7TM 3 1
tetur30g00890 TuABCH-19 721 - 1 NBD-7TM 2
tetur32g01710 TuABCH-20 804 - 1 NBD-6TM 2 4
tetur36g00240 TuABCH-21 777 - 1 NBD-6TM 3 1
tetur36g00630 TuABCH-22 704 - 1 NBD-6TM 1

1T. urticae gene models can be accessed at the ORCAE genome portal, http://bioinformatics.psb.ugent.be/orcae/overview/Tetur webcite[120].

2 transmembrane helices (TMs) were predicted using the SCAMPI server [128] while nucleotide binding domains (NBD) were determined using the ScanProSite facility [121] and Prosite profile PS50893; ( )2 indicates that the T. urticae ABC protein is a full transporter.

3 N-glycosylation sites were predicted using NetNGlyc 1.0 server [131]; only N-glycosylation site with a “potential” score > 0.5 and with a jury agreement were taken into account.

4O-glycosylation sites were predicted using NetOGlyc 3.1 server [132]; if the G-score was higher than 0.5 the residue was considered to be O-glycosylated; in this table the total number of O-glycosylated sites (glycosylated serines

threonines) is shown.

Dermauw et al.

Dermauw et al. BMC Genomics 2013 14:317   doi:10.1186/1471-2164-14-317

Open Data