Table 2

Linkage disequilibrium (r2and |D'|) between pairs (N) of synthetic SNPs separated by different distances across all autosomes
Distance (kb) N Mean r2±SD Median r2 Mean |D'| ±SD Median |D'| % r2> 0.31 % r2> 0.151 % |D'| > 0.81
0 - 1 54404 0.34±0.33 0.21 0.72±0.32 0.90 42 57 44
1 - 2 99488 0.32±0.33 0.19 0.70±0.33 0.88 40 55 42
2 - 3 104465 0.31±0.32 0.18 0.69±0.33 0.86 38 54 41
3 - 4 112729 0.30±0.32 0.17 0.68±0.33 0.84 38 53 40
4 - 5 108799 0.29±0.31 0.16 0.67±0.33 0.82 36 51 39
5 - 10 514160 0.27±0.30 0.14 0.64±033 0.77 33 48 37
10 - 20 977946 0.23±0.28 0.10 0.60±0.33 0.68 28 43 34
20 - 30 946535 0.20±0.26 0.08 0.57±0.33 0.61 24 38 30
30 - 40 927788 0.18±0.24 0.07 0.54±0.33 0.57 21 35 28
40 - 50 918536 0.16±0.23 0.06 0.52±0.33 0.53 19 32 26
50 - 60 908630 0.15±0.22 0.05 0.51±0.32 0.50 17 29 24
60 - 70 901928 0.14±0.21 0.05 0.50±0.32 0.48 15 28 23
70- 80 895944 0.13±0.20 0.04 0.48±0.32 0.47 14 26 21
80 - 90 893132 0.12±0.19 0.04 0.47±0.31 0.45 13 24 20
90 - 100 889644 0.11±0.18 0.04 0.47±0.31 0.44 12 23 19

SNP: single-nucleotide polymorphism; SD: Standard deviation. 1Percentage of SNP pairs with r2 > 0.3, r2 > 0.15 and |D'| > 0.8.

Espigolan et al.

Espigolan et al. BMC Genomics 2013 14:305   doi:10.1186/1471-2164-14-305

Open Data