Table 1

Results of the genome wide association of sleep parameters and SNPs from the DGRP
Trait Trait mean SNPs* % Low frequency Alleles** TraitCVESNPs* % Low frequency Alleles** Overlapping SNPs (%) Trait mean genes TraitCVEgenes Overlapping genes
Night sleep 160 (120) 87.5 1,552 (1,175) 82.0 95.6 53 456 52
Day sleep 0 (0) 0 71 (51) 76.0 0.0 0 23 0
Night bout no. 0 (0) 0 3 (3) 33.3 0.0 0 0 0
Day bout no. 3 (3) 0 340 (198) 82.1 0.0 2 103 0
Night average bout length 16 (16) 68.8 1 (1) 100.0 0.0 6 1 0
Day average bout length 2,082 (1,174) 76.7 5 (3) 100.0 0.1 551 3 2
Waking activity 264 (214) 89.4 4,083 (2,727) 80.7 10.6 87 970 45

*Numbers of SNPs listed have FDR ≤ 0.01; numbers of SNPs accounting for inversions and local LD blocks are listed in parentheses. See text for additional detail.

** Low frequency is defined here as 0.024 ≤ minor allele frequency ≤ 0.05.

Harbison et al.

Harbison et al. BMC Genomics 2013 14:281   doi:10.1186/1471-2164-14-281

Open Data