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Open Access Highly Accessed Research article

Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools

Veljo Kisand12* and Teresa Lettieri2

Author Affiliations

1 Institute of Technology, Tartu University, Nooruse 1, Tartu 50411, Estonia

2 European Commission, Joint Research Centre, Institute for Environment and Sustainability Rural, Water and Ecosystem Resources Unit, TP 270, Via E. Fermi, 2749, Ispra, VA, 21027, Italy

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BMC Genomics 2013, 14:211  doi:10.1186/1471-2164-14-211

Published: 1 April 2013

Additional files

Additional file 1:

Downloadable files with various annotations of rRNA operons from Alcanivorax borkumensis SK2. Files contain the original finished genome annotation on rRNAs, re-annotation of the finished genome sequence by RAST, IMG, and PGAAP, and re-sequenced and re-annotated rRNA operons. Formats used include the raw sequence in FASTA, annotations in GenBank and SAM alignment.

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Open Data