Table 4

Characteristics of repeat elements contained in the Upland cotton BIBAC end sequences (BESs)
Elements Number of elements Length occupied (bp) Percentage of the BES (%)
Retroelements 776 208,081 5.42
 LINEs: 21 4,469 0.12
  L1/CIN4 21 4,469 0.12
 LTR elements: 755 203,612 5.39
  Ty1/Copia 166 40,878 1.06
  Gypsy/DIRS1 578 162,030 4.22
DNA transposons 5 302 0.01
 MuDR-IS905 3 152 0.00
Total interspersed repeats 208,383 5.42
Small RNA 131 36,531 0.95
Simple repeats 201 10,777 0.28
Low complexity 2,289 118,328 3.08

Lee et al.

Lee et al. BMC Genomics 2013 14:208   doi:10.1186/1471-2164-14-208

Open Data