Additional file 2: Table S3.
Functional analysis of Arabidopsis and Rice genes containing ACGT cis-elements. The (A) total number of ACGT(N)ACGT (0<=N<=30) containing promoters in Arabidopsis that are also regulated by certain conditions, with a spacer-length wise frequency analysis, (B) likelihood of occurrence to contain ACGT(N)ACGT, calculated for each of these conditions, (C) identical analysis conducted for each of the eight control elements used previously (Additional file 1), (D) comparison of the likelihoods for ACGT and each of the controls, with conditions highlighted in green being those for which the likelihood of ACGT is significant in the Grubbs’ test for outliers (E) total number of ACGT(N)ACGT (0<=N<=30) containing promoters in Rice that are up-regulated by salt and drought stress, with a spacer length wise analysis and a similar analysis for control elements and (F) comparison of the likelihoods for ACGT and for each of the controls in Rice with both conditions emerging significant in Grubbs’ test for outliers.
Format: XLSX Size: 189KB Download file
Mehrotra et al. BMC Genomics 2013 14:203 doi:10.1186/1471-2164-14-203