Table 6

Correlation of expression of 18 randomly-selected genes among 5-SAGE, microarray and real-time RT-PCR
Description 5-SAGEa Microarraya Real-time RT-PCRa
CC1G_04976 Thiazole biosynthetic enzyme 6.48 3.34 3.80
CC1G_03790 Glutamate decarboxylase 5.55 1.64 3.55
CC1G_00577 CMGC/MAPK protein kinase 4.41 1.41 2.76
CC1G_03377 Protoporphyrinogen oxidase 3.41 −0.17 1.66
CC1G_00689 Thioredoxin 3.16 0.72 2.91
CC1G_07379 Hypothetical protein 1.57 0.19 1.59
CC1G_06934 Hypothetical protein 1.06 −0.85 1.34
CC1G_02958 Actin cytoskeleton protein VIP1 0.82 0.79 0.92
CC1G_10110 Ubiquitin-carboxy protein fusion −0.05 −0.35 −0.32
CC1G_03278 ATP synthase subunit 5 −0.07 −0.21 −0.41
CC1G_07540 60S ribosomal protein L34-b −0.16 −0.64 −0.45
CC1G_07277 40S ribosomal protein S14 −0.95 −0.41 −0.78
CC1G_01940 ATP-synthase delta-subunit −1.34 −0.73 −1.23
CC1G_03707 Prohibitin −1.43 −0.37 −1.44
CC1G_09336 Basic leucine zipper & W2 domain-containing protein 2 −1.97 −1.17 −1.98
CC1G_06761 Glycine dehydrogenase −4.42 0.45 −0.82
CC1G_14100 Hypothetical protein −5.82 −1.53 −3.42
CC1G_01315 Endochitinase −6.63 −1.45 −4.66
Correlation of 5-SAGE and real-time PCR: R=0.936
Correlation of 5-SAGE and microarray: R=0.792

a Values expressed as log2 ratio of Myc/S1-Pri.

Cheng et al.

Cheng et al. BMC Genomics 2013 14:195   doi:10.1186/1471-2164-14-195

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