Table 2

Gene-associated positions of tags mapped to the C. cinerea genome
Myc 5-SAGE S1-Pri 5-SAGE
Putative 5-UTR (−500, -1) a 49718 (56.5%) 61964 (52.4%)
Putative 5-UTR (Anti-sense) b 4363 (5.0%) 8826 (7.5%)
Coding region (sense) 13201 (15.0%) 20195 (17.1%)
Coding region (Anti-sense) b 6030 (6.8%) 8902 (7.5%)
Putative 3-UTR (+1, +500) a 2867 (3.3%) 3031 (2.6%)
Putative 3-UTR (Anti-sense) b 2231 (2.5%) 2889 (2.4%)
Unclassified c 9643 (10.9%) 12450 (10.5%)
Total 88053 (100%) 118257 (100%)

a The (−500, -1) refers to position upstream of the annotated ATG start codon, while (+1, +500) refers to position downstream of the STOP codon.

b ‘Anti-sense’ means that the tag is in opposite orientation of the putative 5/3-UTR, or annotated coding region.

c ‘Unclassified’ means that the tags could not be assigned to any annotated gene.

Cheng et al.

Cheng et al. BMC Genomics 2013 14:195   doi:10.1186/1471-2164-14-195

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