Table 2

Number of mapped reads
Sample Total filtered reads Exon % Intron % Intergenenic %
F12 75,780,826 40,030,725 52.82 1,609,267 2.12 3,060,859 4.04
R12 71,254,122 52,078,194 73.09 1,796,654 2.52 3,890,885 5.46
X12 79,939,758 40,222,370 50.32 1,745,087 2.18 3,398,300 4.25
F34 50,520,686 36,079,475 71.42 1,301,039 2.58 2,746,963 5.44
R34 52,582,652 37,388,453 71.10 1,487,063 2.83 2,974,902 5.66
X34 61,330,602 43,101,722 70.28 1,533,592 2.50 3,273,276 5.34
Total 391,408,646 248,900,939 63.59 9,472,702 2.42 19,345,185 4.94

R, X, and F denote R9308, Xieqingzao B, and Xieyou 9308, respectively. Numbers 12 and 34 denote samples from roots at tillering and heading stages, respectively.

Zhai et al.

Zhai et al. BMC Genomics 2013 14:19   doi:10.1186/1471-2164-14-19

Open Data