Table 5

Summary of RNA-seq analysis
GRZ MZM-0403
Library 6 7 8 9 10 11 12 13
Age (weeks) 5 14 5 31
Organ Skin Brain Skin Brain Skin Brain Skin Brain
Reads 33,947,044 36,117,265 35,963,921 27,369,310 31,727,935 34,720,289 30,268,649 31,423,327
Mapped / Unique (%) 58 / 46 42 / 37 53 / 43 41 / 36 65 / 52 54 / 48 64 / 53 52 / 46
Transcribed genes 17,350 17,638 17,456 17,535 17,170 17,590 17,375 17,644
Median transcript level (rpkm a) 2.3 4.7 2.6 5.7 2.5 5.4 3.5 5.8
Range of transcript levels (rpkm) 0.005 – 13,043 0.006 – 40,801 0.005 – 39,533 0.01 – 5,587 0.006 – 10,409 0.003 – 5,288 0.005 – 3,878 0.009 – 3,946

a Reads per Kilobase per Million mapped reads.

Petzold et al.

Petzold et al. BMC Genomics 2013 14:185   doi:10.1186/1471-2164-14-185

Open Data