Table 4

BLASTx comparison of N. furzeri transcript contigs to the protein/gene annotation of four other fish genomes
Medaka Stickleback Tetraodon Zebrafish
Number of proteins/ genes annotated 24,661 / 19,686 27,576 / 20,787 23,118 / 19,602 41,478 / 26,095
Contigs with hits 87,378 84,761 79,594 87,219
Proteins/genes hit 19,272 / 17,173 20,534 / 17,795 18,613 / 16,744 22,669 / 18,620
78% / 87% 74% / 86% 81% / 85% 55% / 71%
Average protein identity 73.5% 74.6% 73.7% 67.5%
Contigs with hits exclusively in this species 2,791 1,256 531 2,791
Proteins/genes hit 914 / 914 690 / 690 356 / 356 942 / 942
Average protein identity 55.7% 57.0% 62.0% 49.5%

Petzold et al.

Petzold et al. BMC Genomics 2013 14:185   doi:10.1186/1471-2164-14-185

Open Data