Table 3

List of the top 20 longest contigs originated from the 454 run of brain-hypophysis-gonad axis tissues of turbot ( S . maximus)
Contig number Length No. reads Average coverage per nucleotide % GC Annotation E-value Accession number Database
358 5,012 584 33.2 43.4 Cytochrome c oxidase subunit 3 1.00E-127 UniRef90_C7S7B2 Uniref90
4,333 4,486 133 8.3 45.7 Adrenodoxin-like protein mitochondrial 2.00E-60 UniRef90_Q08C57 Uniref90
2,251 4,042 146 10.5 46.1 SSRU rRNA Cavia porcellus 3.00E-13 AAKN02033512 SSU
425 4,010 293 23.3 52.1 Aspartate/tyrosine/aromatic aminotransferase 1.00E-101 YDR111c COG
1,894 3,992 212 13.6 44.3 unknown
2,165 3,964 158 11.0 50.4 Ubiquitin carboxyl-terminal hydrolase 0 UniRef90_B7Z855 Uniref90
762 3,896 464 32.4 48.6 Proliferation-associated 2G4b 1.00E-165 dre:323462 KEGG
1,956 3,797 182 13.8 47.5 Novel protein (Zgc:55794) 0 UniRef90_Q1LWK5 Uniref90
9,828 3,757 54 4.3 44.1 FAM3C 9.00E-57 UniRef90_B5X712 Uniref90
12,120 3,753 63 4.3 47.0 Zgc:165446 protein 1.00E-65 UniRef90_A6H8R7 Uniref90
3,201 3,707 128 10.3 46.6 Novel protein similar to WDR44 0 dre:569045 KEGG
2,212 3,700 116 9.1 38.6 Osteocalcin 2.00E-12 UniRef90_D2XEB2 Uniref90
1,541 3,673 181 14.7 48.3 Cell division cycle 1.00E-105 UniRef90_Q6PFU4 Uniref90
2,167 3,623 173 12.3 45.1 M-phase phosphoprotein 10 1.00E-148 dre:323426 KEGG
280 3,613 287 27.3 44.9 NADH dehydrogenase subunit 5 0 UniRef90_C7S7B6 Uniref90
4,193 3,611 85 6.2 41.3 Suppressor of tumorigenicity 7 protein 1.00E-34 UniRef90_Q1RLU8 Uniref90
644 3,571 531 42.1 46.3 RAD1 homolog 1.00E-145 UniRef90_Q6P2T4 Uniref90
1,248 3,569 127 10.8 43.8 60S ribosomal protein 2.00E-45 UniRef90_P61513 Uniref90
2,845 3,555 106 8.1 43.4 NF-kappaB repressing factor 1.00E-79 gga:422370 KEGG
5,634 3,550 84 5.8 47.1 WD repeat domain phosphoinositide 0 UniRef90_Q5MNZ6 Uniref90

Ribas et al.

Ribas et al. BMC Genomics 2013 14:180   doi:10.1186/1471-2164-14-180

Open Data