Table 1

Statistics for 454 pyrosequencing libraries
Skeletal muscle Intestine Blood HK-38 HK-105
Pyrosequencing reads
High-quality reads 447,166 614,899 576,796 577,112 729,941
Average read length (bp) 294 304 290 349 320
Total Megabases 131.5 186.9 167.3 201.4 233.6
Assembly statistics
Number of contigs 7,808 9,475 12,003 14,008 12,474
Reads assembled 314,628 482,080 389,934 392,195 508,826
Average contig length (bp) 968 1,090 831 1,059 1,148
  Number of singletons 48,750 80,527 114,984 105,431 91,885
  Average singleton length (nt) 316 298 284 318 334
  Total consensus Megabases 23.0 34.3 42.7 48.4 45.0
  Average sequences coverage 6.4 6.3 4.0 4.2 5.8

Sequence characteristics of the five 454 normalized libraries derived from skeletal muscle, intestine, blood and head kidney (HK-38, early parasite infection; HK 105, chronic parasite infection).

Calduch-Giner et al.

Calduch-Giner et al. BMC Genomics 2013 14:178   doi:10.1186/1471-2164-14-178

Open Data