Table 1

Summary of Illumina single-end read sequence data and de novo assembly; perfect di-, tri- and tetra-nucleotide SSR loci for Brachiaria ruziziensis
All contigs Only contigs >200 bp
Reads # 186,764,108 186,764,108
Read average length bp 76 76
Reads bp 14,194,072,208 14,194,072,208
Mapping Parameters (LF - SIM) 0.5 - 0.8 1.0 - 1.0
Reads Matched 179,690,233 68,644,823
Matched bp 13,656,457,708 5,217,006,548
Contigs # 1,113,797 419,751
N50 585 954
Contigs bp 367,553,010 277,588,081
Average coverage 37x 18,8x
Contig average length 330 661
Perfect microsatellite sequences 139,098 85,567
Di-nucleotides 13,127 3,919
Tri-nucleotides 113,098 72,902
Tetra-nucleotides 12,892 8,746

Silva et al.

Silva et al. BMC Genomics 2013 14:17   doi:10.1186/1471-2164-14-17

Open Data