Table 1 |
||
| Summary of Illumina single-end read sequence data and de novo assembly; perfect di-, tri- and tetra-nucleotide SSR loci for Brachiaria ruziziensis | ||
| All contigs | Only contigs >200 bp | |
| Reads # | 186,764,108 | 186,764,108 |
| Read average length bp | 76 | 76 |
| Reads bp | 14,194,072,208 | 14,194,072,208 |
| Mapping Parameters (LF - SIM) | 0.5 - 0.8 | 1.0 - 1.0 |
| Reads Matched | 179,690,233 | 68,644,823 |
| Matched bp | 13,656,457,708 | 5,217,006,548 |
| Contigs # | 1,113,797 | 419,751 |
| N50 | 585 | 954 |
| Contigs bp | 367,553,010 | 277,588,081 |
| Average coverage | 37x | 18,8x |
| Contig average length | 330 | 661 |
| Perfect microsatellite sequences | 139,098 | 85,567 |
| Di-nucleotides | 13,127 | 3,919 |
| Tri-nucleotides | 113,098 | 72,902 |
| Tetra-nucleotides | 12,892 | 8,746 |
Silva et al. BMC Genomics 2013 14:17 doi:10.1186/1471-2164-14-17
