Table 1

Validation summary of deletions, inversions and translocations for each sample
Tumor sample Deletion Inversion Translocation
Attempted Non-validated Constitutional Somatic Attempted Non-validated Constitutional Somatic Attempted Non-validated Constitutional Somatic
113 T 8 8 0 0 0 0 0 0 2 2 0 0
114 T 5 4 1 0 0 0 0 0 5 2 3 0
116 T 1 0 1 0 4 2 0 2 1 0 0 1
117 T 0 0 0 0 0 0 0 0 1 0 1 0
118 T 3 1 2 0 0 0 0 0 12 5 1 6
119 T 1 0 0 1 3 3 0 0 3 0 0 3
120 T 3 0 3 0 3 2 0 1 3 0 0 3
147 T 2 0 2 0 0 0 0 0 0 0 0 0
148 T 4 0 4 0 5 5 0 0 8 3 3 2
149 T 16 4 8 4 1 0 0 1 9 4 1 4
150 T 5 1 4 0 1 1 0 0 0 0 0 0
151 T 4 0 4 0 1 0 0 1 1 1 0 0
152 T 1 0 0 1 0 0 0 0 0 0 0 0
153 T 19 9 9 1 6 3 3 0 12 3 3 6
154 T 7 1 5 1 1 0 0 1 4 1 2 1

Due to the size of mate-pair inserts, insertions could not be validated by PCR. Attempted denotes the number of rearrangements attempted to validate, and Constitutional and Somatic denote the number of validated rearrangements in the normal and tumor samples validated by PCR followed by Sanger sequencing.

Jiao et al.

Jiao et al. BMC Genomics 2013 14:165   doi:10.1186/1471-2164-14-165

Open Data