Table 3

RXE based on annotation
Annotation type Human liver Human brain Human lymphoblast 45, Xm Human lymphoblast 45, Xp
RefSeq −0.28 0.16 −0.14 −0.19
RefSeq protein coding −0.41 −0.11 −0.17 −0.25
Ensemble (gene) −0.33 −0.09 0.34 0.02
Ensemble (transcript) −0.12 0.09 0.01 −0.45
UCSC (h19) known genes 0.05 0.08 0.00 −0.66
Gencode −0.07 0.09 −0.12 −0.38

Variation in relative X-chromosome expression values resulting from different genome annotations used in mapping. All data was log2-transformed. For each row, the same mapping file was used, but a different annotation was implemented in the program Cufflinks in order to generate FPKM values for each gene.

Jue et al.

Jue et al. BMC Genomics 2013 14:150   doi:10.1186/1471-2164-14-150

Open Data