Table 2

Characterization of cattle CNVRs on autosomes based on different platforms
Study Summary statistics of CNVRs
Mean(Kb) Median(Kb) Min(Kb) Max(Kb) Standard deviation Total length(Mb) No. of CNVR
CGH-based Studies Fadista et al. [25] 62.05 9.73 1.72 2031.34 155.05 15.76 254
Liu et al. [24] 153.75 86.19 18 1261.9 178.29 25.06 163
averge 107.90 47.96 9.86 1646.62 166.67 20.41 208.50
SNP-based Studies (54k chip) Hou et al. [26] 204.97 131.18 32.57 5569.1 296.49 139.79 682
Bae et al. [23] 171.49 128.33 25.35 967.18 135.67 63.11 368
Hou et al. [58] 174.88 128.27 25.8 1417.77 157.98 141.83 811
Jiang et al. [60] 235.46 156.54 27 1312.35 225.47 23.78 101
averge 196.70 136.08 27.68 2316.60 203.90 92.13 490.50
SNP-based Studies (HD chip) This study* 96.23 50.64 10.76 2806.42 201.99 34.45 358
Hou et al. [55]* 42.73 15.65 1.03 4345.96 148.5 146.91 3438
averge 69.48 33.15 5.90 3576.19 175.25 90.68 1898
Resequencing-based Studies Bickhart et al. [8] 42.89 22.76 10.02 510.94 54.65 47.99 1119
Zhan et al. [5] 6.98 3.8 3.17 129.97 10.29 3.63 520
Stothard et al. [4] 4.16 3.17 1.84 28.03 2.96 3.29 790
averge 18.01 9.91 5.01 222.98 22.63 18.30 809.67

*: Based on UMD3.1 bovine genome assembly, others based on Btau4.0 bovine genome assembly.

Jiang et al.

Jiang et al. BMC Genomics 2013 14:131   doi:10.1186/1471-2164-14-131

Open Data