Open Access Research article

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins

Li Jiang1, Jicai Jiang1, Jie Yang1, Xuan Liu1, Jiying Wang2, Haifei Wang1, Xiangdong Ding1, Jianfeng Liu1 and Qin Zhang1*

Author Affiliations

1 Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture, College of Animal Science and Technology, China Agricultural University, Beijing, 100193, P. R. China

2 Shandong Provincial Key Laboratory of Animal Disease Control and Breeding, Institute of Animal Science and Veterinary Medicine, Shandong Academy of Agricultural Sciences, Jinan, 250100, China

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BMC Genomics 2013, 14:131  doi:10.1186/1471-2164-14-131

Published: 27 February 2013

Additional files

Additional file 1: Table S1:

The detailed features of CNVRs on autosomes identified in this study. Table S2. The detailed features of CNVRs on on the X chromosome identified in this study. Table S3. Information of the 17 CNVRs to be validated by qPCR and the primers used for qPCR. Table S4. Genes covered by or overlapped with CNVRs, their orthologs in human genome and comparison with genes included in Human Database of Genomic Variants (DGV). Table S5. Ontology (GO) analyses of genes in CNVRs detected in this study. Table S6. Pathway analyses of genes in CNVRs detected in this study. Table S7. QTLs harbored within or overlapped with identified CNVRs across the bovine genome. Table S8. Ratios of total CNVR length on a chromosome to the chromosomal length. Table S9. Genome coordinates of CNVRs converted in BTAU4.0 bovine genome assembly.

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