Table 1

GO terms over-represented in promoter classes
Biological Process Molecular Function
Class Term Description P Term Description P
INR+FPR GO:0044403 symbiosis 2e-32 GO:0004553 O-glycosyl hydrolase 8e-10
GO:0005975 carbohydrate metabolism 3e-10 GO:0004650 polygalacturonase 1e-7
GO:0007047 cell wall organization 8e-7 GO:0016491 oxidoreductase 5e-6
GO:0055085 transmembrane transport 1e-5 GO:0048037 cofactor binding 7e-5
GO:0006200 ATP catabolic process 6e-5 GO:0022857 transmembrane transport 7e-5
GO:0046034 ATP metabolic process 7e-4
INR alone none none
FPR alone GO:0044237 cellular metabolic process 1e-3 GO:0005515 protein binding 1e-3
GO:0050790 regulation of catalytic activity 5e-3
GO:0044260 macromolecule metabolism 5e-3
GO:0044267 protein metabolic process 7e-3
DPEP GO:0044237 cellular metabolic process 1e-3 GO:0003735 structural constituent of ribosome 3e-4
GO:0009165 nucleotide biosynthesis 1e-3
CCAAT GO:0006412 translation 8e-13 GO:0003735 structural constituent of ribosome 2e-18
GO:0044249 cellular biosynthetic process 3e-12
GO:0010467 gene expression 2e-8
GO:0009058 biosynthetic process 6e-8
GO:0044237 cellular metabolic process 5e-6
GO:0006729 tetrahydrobiopterin biosynthesis 2e-3

Genes containing the indicated motifs that are associated with the over-represented terms are listed in Additional File 3.

Roy et al.

Roy et al. BMC Genomics 2013 14:106   doi:10.1186/1471-2164-14-106

Open Data