Table 2

Analyses of associations between markers per exact Fisher test for the different genetic groups considered
Diversity group Number of individuals Number of polymorphic markers Number of 2-by-2 tests Limit(5%)after Bonferronis correction Number of significant associations(exact test) Number of significant within-linkage group associations and percentage compared to the total significant associations Number of significant between-linkage group associations and percentage compared to the total significant associations Within-linkage group: Between-linkage group ratio
All genotypes 356 108 5778 8.65351E-06 5684 98% 680 12% 5004 88% 0.14
C 92 98 4753 1.05197E-05 72 2% 62 86% 10 14% 6.20
SG1 16 93 4278 1.16877E-05 177 4% 29 16% 148 84% 0.20
SG2 85 107 5671 8.81679E-06 389 7% 144 37% 245 63% 0.59
Pélézi 35 74 2701 1.85117E-05 116 4% 85 73% 31 27% 2.74
G 128 97 4656 1.07388E-05 483 10% 99 20% 384 80% 0.26
G sub1 54 85 3570 1.40056E-05 73 2% 49 67% 24 33% 2.04
G sub2 17 73 2628 1.90259E-05 38 1% 32 84% 6 16% 5.33
G sub3 57 96 4560 1.09649E-05 36 1% 20 56% 16 44% 1.25

Cubry et al.

Cubry et al. BMC Genomics 2013 14:10   doi:10.1186/1471-2164-14-10

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