Figure 3.

Comparison of the calling performance of SAMtools, GATK and GlfMultiples in terms of dbSNP rate, Ti/Tv ratio, novel Ti/Tv ratio and NRD (non-reference discrepancy) from all regions, inside target regions, outside target regions with ≤ 200 bp distance and outside target regions > 200 bp distances from Illumina whole-exome sequencing data.

Liu et al. BMC Genomics 2012 13(Suppl 8):S8   doi:10.1186/1471-2164-13-S8-S8