This article is part of the supplement: The International Conference on Intelligent Biology and Medicine (ICIBM) Genomics
Research
Enrichment-based DNA methylation analysis using next-generation sequencing: sample exclusion, estimating changes in global methylation, and the contribution of replicate lanes
1 Comprehensive Cancer Center, The Ohio State University, Columbus, Ohio, USA
2 Departments of Physics and Biochemistry, The Ohio State University, Columbus, Ohio, USA
BMC Genomics 2012, 13(Suppl 8):S6 doi:10.1186/1471-2164-13-S8-S6
Published: 17 December 2012Additional files
Additional file 1:
Replicate lane correlation, endometrial QC passed vs. QC failed samples. A table showing Pearson correlation of replicate lanes for samples that passed QC vs. failed QC. Data is presented both as a group summary and for individual samples.
Format: XLSX Size: 14KB Download file
Additional file 2:
QC table for endometrial cancer study. A listing of CpG enrichment, saturation, 5x coverage, and read information for each sample lane in the endometrial dataset.
Format: XLSX Size: 38KB Download file
Additional file 3:
QC table for ovarian study. A listing of CpG enrichment, saturation, 5x coverage, and read information for each sample lane in the ovarian dataset.
Format: XLSX Size: 13KB Download file
Additional file 4:
QC, GMI, plasmid RPM table for AML study. A listing of CpG enrichment, saturation, 5x coverage, read information, global methylation indicator, and plasmid reads per million for each sample lane in the AML dataset.
Format: XLSX Size: 12KB Download file
