Table 7

AUC of causal orientation

Method

ECOLI

YEAST

NOTCH1

RELA


ANM

0.464

0.379

0.456

0.369

PNL

0.443

0.464

0.520

0.520

IGCI (Uniform/Entropy)

0.713

0.409

0.708

0.805

IGCI (Uniform/Integral)

0.642

0.437

0.631

0.757

IGCI (Gaussian/Entropy)

0.813

0.613

0.935

0.967

IGCI (Gaussian/Integral)

0.724

0.655

0.834

0.927

GPI-MML

0.488

0.370

0.184

0.333

ANM-MML

0.393

0.237

0.078

0.071

GPI

0.536

0.396

0.594

0.513

ANM-GAUSS

0.474

0.476

0.807

0.446

LINGAM

0.462

0.463

0.362

0.392

RANDOM

0.500

0.500

0.500

0.500


For each gold standard (column) dark orange cells correspond to methods that have high values of AUC, while white cells correspond to methods that have low values of AUC. AUCs higher than 0.50 are shown in bold.

Statnikov et al. BMC Genomics 2012 13(Suppl 8):S22   doi:10.1186/1471-2164-13-S8-S22

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