Additional File 2.

ROC curves for CTF, Chromia and PWM on the dataset of 13 transcription factors. This figure, similar to Figure 5, contained the ROC curves of CTF, Chromia and PWM on all 13 transcription factors. CTF was the CTF model with all features and its ROC curve was obtained by using a 10-fold cross-validation procedure and changing the threshold. ROC curve of Chromia was calculated by using the same data and model contained in its release. ROC curve of PWM was got by scoring directly.

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He et al. BMC Genomics 2012 13(Suppl 8):S18   doi:10.1186/1471-2164-13-S8-S18