Table 4 |
||||||
|
Improvement in GWAS-based association FDR as multi-species gene ranking score increases. |
||||||
|
FDR q-value |
Total SNPs passing QC |
Scored |
Score ≥1 |
Score ≥1.5 |
Score ≥2 |
Score = 2.5 |
|
|
||||||
|
All SNPs |
547920 |
91774 |
18988 |
7948 |
2293 |
210 |
|
< 0.9 |
48016 |
6399 |
1863 |
399 |
866 |
178 |
|
< 0.8 |
643 |
469 |
415 |
163 |
199 |
108 |
|
< 0.7 |
6 |
8 |
164 |
5 |
117 |
72 |
|
< 0.6 |
0 |
5 |
0 |
0 |
42 |
53 |
|
< 0.5 |
0 |
5 |
0 |
0 |
39 |
0 |
|
< 0.4 |
0 |
5 |
0 |
0 |
27 |
0 |
|
< 0.3 |
0 |
0 |
0 |
0 |
0 |
0 |
|
< 0.2 |
0 |
0 |
0 |
0 |
0 |
0 |
|
< 0.1 |
0 |
0 |
0 |
0 |
0 |
0 |
|
< 0.05 |
0 |
0 |
0 |
0 |
0 |
0 |
|
Min q |
0.605 |
0.369 |
0.667 |
0.636 |
0.357 |
0.526 |
|
|
||||||
|
Zhao et al. BMC Genomics 2012 13(Suppl 8):S16 doi:10.1186/1471-2164-13-S8-S16 |
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