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This article is part of the supplement: Eleventh International Conference on Bioinformatics (InCoB2012): Computational Biology

Open Access Proceedings

Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs)

Gagan Garg1 and Shoba Ranganathan12*

Author Affiliations

1 Dept. of Chemistry and Biomolecular Sciences and ARC Centre of Excellence in Bioinformatics, Macquarie University, Sydney NSW 2109, Australia

2 Dept. of Biochemistry, Yong Loo Lin School of Medicine, National University of Singapore, 8 Medical Drive, Singapore 117597

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BMC Genomics 2012, 13(Suppl 7):S8  doi:10.1186/1471-2164-13-S7-S8

Published: 13 December 2012

Additional files

Additional File 1:

Summary of large scale helminth EST analysis. Statistics of excretory/secretory proteins and Unigenes across different helminth species (Table S1)

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Additional File 2:

Gene Ontology distribution of helminth ES proteins. Statistics of Gene Ontology distribution across different helminth species (Table S2)

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Additional File 3:

Helminth ES protein domain mapping. Represented Interpro domains found in helminth ES proteins. (Table S3)

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Additional File 4:

KEGG BRITE objects mapping of helminth ES proteins. Represented KEGG BRITE objects found in ES proteins predicted by KAAS (Table S4)

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Additional File 5:

Comparison of putative helminth ES proteins with C. elegans (Wormpep) and S. mansoni proteins. Statistics of sequence similarity results of helminth ES proteins with C. elegans (Wormpep) and S. mansoni proteins using BLASTP across different helminth species (Table S5)

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Additional File 6:

Comparison of putative helminth ES proteins with NR database proteins. Statistics of sequence similarity results of helminth ES proteins with NR database proteins using BLASTP across different helminth species (Table S6)

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Additional File 7:

Comparison of putative helminth ES proteins with S. japonicum, human proteins. Statistics of sequence similarity results of helminth ES proteins with S. japonicum, human proteins using BLASTP across different helminth species (Table S7)

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Additional File 8:

Comparison of putative helminth ES proteins with interaction databases proteins. Statistics of sequence similarity results of helminth ES proteins with interaction databases proteins using BLASTP across different helminth species (Table S8)

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