This article is part of the supplement: Eleventh International Conference on Bioinformatics (InCoB2012): Computational Biology

Open Access Proceedings

Quantitative assessment of mitochondrial DNA copies from whole genome sequencing

Hsueh-Ting Chu12, William WL Hsiao34, Theresa TH Tsao5, Ching-Mao Chang6, Yen-Wenn Liu8, Chen-Chieh Fan5, Han Lin5, Hen-Hong Chang67, Tze-Jung Yeh9, Jen-Chih Chen9, Dun-Ming Huang2, Chaur-Chin Chen10 and Cheng-Yan Kao5*

Author Affiliations

1 Department of Biomedical informatics, Asia University, Taichung 41354, Taiwan

2 Department of Computer Science and Information Engineering, Asia University, Taichung 41354, Taiwan

3 BCCDC Public Health Microbiology & Reference Laboratory, Vancouver, BC, V5Z 4R4, Canada

4 Department of Pathology and Laboratory Medicine, Vancouver, BC, V5Z 4R4, Canada

5 Department of Computer Science and Information Engineering, National Taiwan University, Taipei 10617, Taiwan

6 Graduate Institute of Clinical Medical Science, Chang Gung University, Taoyuan 33302, Taiwan

7 Center for Traditional Chinese Medicine, Chang Gung Memorial Hospital at Taoyuan, Chang Gung Medical Foundation, Taoyuan 33302, Taiwan

8 Institute of Food Science and Technology, National Taiwan University, Taipei 10617, Taiwan

9 Institute of Biotechnology, National Taiwan University, Taipei 10617, Taiwan

10 Department of Computer Science, National Tsing Hua University, Hsinchu 30013, Taiwan

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BMC Genomics 2012, 13(Suppl 7):S5  doi:10.1186/1471-2164-13-S7-S5

Published: 13 December 2012

Additional files

Additional File 1:

Supplementary Software. The MitoCounter software package consists of two execution programs, an Excel template and a User manual.

Format: XLS Size: 27KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional File 2:

Supplementary Table 1. An Excel file lists the ratio of mitochondrial reads in each WGS run for the family trio YOR009 samples.

Format: XLS Size: 31KB Download file

This file can be viewed with: Microsoft Excel Viewer

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Additional File 3:

Supplementary Table 2. An Excel file lists the ratio of mitochondrial reads in each WGS run for the family trio CEPH1463 samples.

Format: ZIP Size: 1.6MB Download file

Open Data