Table 6

Protein similarity search of ethanolamine utilization (eut) operon of M. morganii

eut genes


eutS

Eco (85%)

Eb(84%)

Ko(84%)

eutP

Eco (67%)

Ss(66%)

Sb(66%)

eutQ

Se (63%)

Ko(63%)

Yi(63%)

eutT

Eco (65%)

Ko(65%)

Yi(64%)

eutD

Eco (72%)

Ko(70%)

Yi(69%)

eutM

Yi (96%)

Eco(94%)

Ecl(94%)

eutN

Yi (84%)

Cy(74%)

Ecl(74%)

eutE

Ck (78%)

Eco(77%)

Yi(76%)

eutJ

Yi (73%)

Eco(71%)

Cy(70%)

eutG

Yi (67%)

Ko(59%)

Se(58%)

eutH

Yi (82%)

Cy(80%)

Yr(80%)

eutA

Yi (76%)

Pa(70%)

Cy(67%)

eutB

Yi (85%)

Cy(85%)

Yr(85%)

eutC

Eco (78%)

Ko(77%)

Ecl(77%)

eutL

Cy (87%)

Se(85%)

Ecl(85%)

eutK

Eco (56%)

Se(53%)

Cy(51%)

pduS

Ha (66%)

Yi(66%)

Eb(65%)

pduT

Ta (63%)

Yi(63%)

Eb(63%)

eutR

Yi (62%)

Ko(56%)

Eco(56%)


M. morganii has longest ethanolamine utilization (eut) operon, eutSPQTDMNEJGHABCLK-pduST-eutR which consists of 19 genes.

The two novel genes in eut of M. morganii KT, pduT and pduS, were found orthologous protein from pdu operon from other species. Sequence identity of best top three hits ranging from 51 to 87% and species were varied. Abbreviation of species were Eco: Escherichia coli; Eb: Enterobacteriaceae bacterium; Ko: Klebsiella oxytoca; Ss: Shigella sonnei; Sb: Shigella boydii; Se: Salmonella enterica; Yi: Yerisinia intermedia; Yr: Yokenella regensburgei; Ecl: Enterobacter cloacae; Cy: Citrobacter youngae; Ck: Citrobacter koseri; Ta: Tolumonas auensis; Ha: Hafnia alvei; Pa: Photorhabdus asymbiotica. Id (%) represent percent of identify compare two orthologous proteins.

Chen et al. BMC Genomics 2012 13(Suppl 7):S4   doi:10.1186/1471-2164-13-S7-S4

Open Data