This article is part of the supplement: Eleventh International Conference on Bioinformatics (InCoB2012): Computational Biology

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Whole-genome sequencing and identification of Morganella morganii KT pathogenicity-related genes

Yu-Tin Chen1, Hwei-Ling Peng2, Wei-Chung Shia3, Fang-Rong Hsu45, Chuian-Fu Ken6, Yu-Ming Tsao7, Chang-Hua Chen8, Chun-Eng Liu8, Ming-Feng Hsieh1, Huang-Chi Chen9, Chuan-Yi Tang110* and Tien-Hsiung Ku7*

Author Affiliations

1 Department of Computer Science, National Tsing Hua University, 101, Section 2, Kuang-Fu Rd., Hsinchu, Taiwan

2 Department of Biological Science and Technology, National Chiao Tung University, 1001, University Road, Hsinchu, Taiwan

3 Cancer Research Center, Changhua Christian Hospital, 135, Nanhsiao St., Changhua, Taiwan

4 Master's Program in Biomedical Informatics and Biomedical Engineering, Feng Chia University, 100 Wenhwa Rd., Taichung, Taiwan

5 Department of Information Engineering and Computer Sciences, Feng Chia University, 100 Wenhwa Rd., Taichung, Taiwan

6 Institute of Biotechnology, National Changhua University of Education, 2 Shi-Da Rd., Changhua, Taiwan

7 Department of Anesthesiology, Changhua Christian Hospital, 135, Nanhsiao St., Changhua, Taiwan

8 The Division of Infectious Diseases, Department of Internal Medicine, Changhua Christian Hospital, 135, Nanhsiao St., Changhua, Taiwan

9 Division of Critical Care Medicine, Department of Internal Medicine, Changhua Christian Hospital, 135, Nanhsiao St., Changhua, Taiwan

10 Department of Computer Science, Providence University, 200, Chung-Chi Rd., Taichung, Taiwan

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BMC Genomics 2012, 13(Suppl 7):S4  doi:10.1186/1471-2164-13-S7-S4

Published: 13 December 2012

Additional files

Additional File 1:

Supplementary Figure 1. The origin of replication was assigned based on the GC deviation of the genome using Ori-Finder (*.pdf)

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Additional File 2:

Supplementary table 1. Resequencing analysis on assembled contigs (*.xls)

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Additional File 3:

Supplementary table 2. M. morganii genes involved in multidrug efflux genes (*.pdf)

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Additional File 4:

Supplementary table 3. Flagellum-related genes and chemotaxis genes located in 58.8-kb locus of M. morganii (*.pdf)

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Additional File 5:

Supplementary table 4. Protein similarity search of Type III secretion system (T3SS) of M. morganii (*.pdf)

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Additional File 6:

Supplementary table 5. M. morganii genes involved in lipopolysaccharide or enterobacterial common antigen biosynthesis (*.pdf)

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Additional File 7:

Supplementary table 6. Protein similarity search of insecticidal toxin of M. morganii (*.pdf)

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Additional File 8:

Supplementary table 7. M. morganii genes involved in superoxide stress (*.pdf)

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Additional File 9:

Supplementary Table 8. 2 prophages and 12 degenerate prophages (*.xls)

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Additional File 10:

Supplementary Table 9. Specific CDSs in M. morganii compared to other Enterobacteriaceae (n = 14) and/or Proteeae (n = 5). (*.xls)

Format: XLSX Size: 33KB Download file

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Additional File 11:

Supplementary Table 10. Comparison of CDSs in M. morganii compared to other Enterobacteriaceae (n = 14) and Proteeae (n = 5). (*.xls)

Format: XLSX Size: 432KB Download file

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