Table 4

Arm selection preference of 5p arm and 3p arm miRNAs in normal breast and breast tumor tissues.

pre-miRNA

Location

N5p

N3p

T5p

T3p


hsa-miR-214

mi:30-51; MA:71-92

88

226

133

171

hsa-miR-576

5p:16-37; 3p:55-76

7

44

19

17

hsa-miR-154

MA:15-36; mi:51-72

21

8

7

14

hsa-miR-193a

5p:21-42; 3p:55-76

1 836

1 127

488

2 384

hsa-miR-296

5p:14-34; 3p:48-69

24

34

8

4

hsa-miR-361

5p:6-27; 3p:45-67

105

215

1 043

310

hsa-miR-324

5p:16-38; 3p:53-72

233

341

317

91

hsa-miR-339

5p:15-37; 3p:50-72

215

217

298

194

hsa-miR-493

mi:16-37; MA:57-78

2

5

22

9

hsa-miR-455

5p:16-37; 3p:54-74

99

72

107

308

hsa-miR-664

mi:11-34; MA:49-71

58

8

21

87

hsa-miR-212

3pM:71-91

22

7

7

6

hsa-miR-142

5p:16-36; 3p:52-74

914

1 102

8 661

10 074

hsa-miR-362

5p:5-28; 3p:42-63

174

34

145

114

hsa-miR-376a-1

mi:7-28; MA:44-64

41

24

9

13

hsa-miR-382

5pM:11-32

217

23

51

30

hsa-miR-151

5p:11-31; 3p:47-67

946

1 249

2 721

3 109


N5p, N3p, T5p, and T3p denote miRNA relative read counts (TPM) of 5p arm and 3p arm in normal and tumor tissues

Chang et al. BMC Genomics 2012 13(Suppl 7):S18   doi:10.1186/1471-2164-13-S7-S18

Open Data