Table 1 |
||||||
|
Discovery and verification of bacterial sRNAs in previous studies. |
||||||
|
Bacteria |
Computational discovery method |
Verification method |
Number of sRNAs |
Reference |
||
|
|
||||||
|
Predicted |
Tested |
Verified |
||||
|
|
||||||
|
Escherichia coli |
QRNA |
Northern blot |
275 |
49 |
11 |
[64] |
|
Escherichia coli |
Pftools2.2 & RNAMotif |
Northern blot |
227 |
8 |
7 |
[65] |
|
Burkholderia cenocepacia |
QRNA |
Microarray |
3,441 |
213 |
4 |
[39] |
|
Streptomyces coelicolor |
BLAST & TransTermHP |
RT-PCR & microarray |
37 |
32 |
20 |
[66] |
|
Synechocystis PCC6803 |
RNAz |
Northern blot |
383 |
2 |
2 |
[67] |
|
Staphylococcus aureus |
RNAsim |
Northern blot |
774 |
36 |
11 |
[68] |
|
Escherichia coli |
Anonymous program |
Northern blot |
601 |
6 |
3 |
[69] |
|
Salmonella enterica Typhimurium |
sRNAscanner |
Northern blot |
156 |
16 |
6 |
[46] |
|
Streptomyces coelicolor |
RNAz & nocoRNAc |
Microarray |
843 |
403 |
317 |
[47] |
|
Burkholderia pseudomallei |
SIPHT, sRNAscanner & Rfam_scan |
RT-PCR |
1306 |
15 |
8 |
This study. |
|
|
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|
Khoo et al. BMC Genomics 2012 13(Suppl 7):S13 doi:10.1186/1471-2164-13-S7-S13 |
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