This article is part of the supplement: Eleventh International Conference on Bioinformatics (InCoB2012): Computational Biology
Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs
1 School of Biosciences and Biotechnology, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600 UKM Bangi, Malaysia
2 Codon Genomics SB, Jalan Bandar 18, Pusat Bandar Puchong, Selangor Darul Ehsan, Malaysia
3 Malaysia Genome Institute, Jalan Bangi Lama, 43000 Kajang, Malaysia
BMC Genomics 2012, 13(Suppl 7):S13 doi:10.1186/1471-2164-13-S7-S13Published: 13 December 2012
Additional file 1:
Bacterial genomes studied. List of genome sequences used for sRNA prediction and analysis.
Format: DOCX Size: 38KB Download file
Additional file 2:
Primers. Nucleotide sequences of PCR primers for amplifying sRNA genes.
Format: DOCX Size: 15KB Download file
Additional file 3:
sRNA candidates. List of sRNA candidates predicted in fourteen bacterial genomes.
Format: XLS Size: 913KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional file 4:
Comparative analysis. The results of comparative analysis of sRNA candidates predicted.
Format: XLSX Size: 167KB Download file
Additional file 5:
Secondary structures of known sRNAs identified. Secondary structures visualization for known sRNAs discovered in this study and reference structures predicted from Rfam entries.
Format: DOCX Size: 2.7MB Download file
Additional file 6:
Infernal search results. The results of putative sRNA homologues search using Infernal.
Format: XLSX Size: 76KB Download file