Table 2

Overview of the co-occurrences in TLR-stimulated DC gene expression patterns.

Cluster index

Promoter set

PWM A

PWM B

TF(s) associated with PWM A

TF(s) associated with PWM B


1

nonCpG

M00054

M00054

NF-kappaB

NF-kappaB

1

all

M00054

M00054

NF-kappaB

NF-kappaB

9

all

M00054

M00054

NF-kappaB

NF-kappaB

12

all

M00063

M01171

IRF family

Bcl6

12

all

M00063

M00963

IRF family

T3R

12

nonCpG

M00063

M00963

IRF family

T3R

12

nonCpG

M00063

M01171

IRF family

Bcl6

13

all

M00063

M00063

IRF family

IRF

13

all

M00063

PB0060

IRF family

Hand1::Tcfe2a, Hand1:E47, SMAD, Smad3

13

all

M00063

M00701

IRF family

Smad3

14

all

M00054

M00249

NF-kappaB

CHOP:C/EBPalpha

14

all

M00054

M00257

NF-kappaB

RREB-1

14

all

M00054

M00769

NF-kappaB

AML, Osf2, PEBP, Runx1

18

all

M00063

MA0099

IRF family

Fos


Vandenbon et al. BMC Genomics 2012 13(Suppl 7):S11   doi:10.1186/1471-2164-13-S7-S11

Open Data