Regions displaying promoter patterns that overlap with transcripts or other regulatory regions. (A) Region that overlap with non-coding RNA (hsa-mir-375) on chromosome 2. (B) Region that overlap with 7 human ESTs. (C) Region that is overlap with detected transcript in RNA-seq data. (D) Region that is overlap with ER binding site. Examples of regions displaying promoter patterns. (E) Region that overlap with CpG island (F) Region that overlap with CTCF. Regions are found hierarchically. Hence region that overlap with CTCF do not have an overlap with any other annotation.
Taslim et al. BMC Genomics 2012 13(Suppl 6):S3 doi:10.1186/1471-2164-13-S6-S3