Table 2

Results summary

Performance indices

Median values

Peptide identification rate

0.17

Protein quantification rate

0.54

Protein quantification error

0.67

Percentage of detected markers

52%

LDA error on the original protein data

0.01

KNN error on the original protein data

0.03

LDA error on the observed protein data

0.18

KNN error on the observed protein data

0.24

Sun et al. BMC Genomics 2012 13(Suppl 6):S2   doi:10.1186/1471-2164-13-S6-S2