Table 1

Summarizes the amount of computation and time required to get the data (Chr 2 and Chr 19) onto Genboree and to run through the variant calling steps.

Resource usage (Chr2/Chr 19)


PatientX

PatientY


Size of BAM file (GB)

22/5

24/6

Time to upload (Min)

70/12

85/13

Atlas2 Runtime (Min)

390/27

420/33

Atlas2 Memory Usage (MB)

1196/275

1192/270


Evani et al. BMC Genomics 2012 13(Suppl 6):S19   doi:10.1186/1471-2164-13-S6-S19

Open Data