Table 5

Enriched KEGG pathways for module genes using the hypergeometric test

Pathway name (KEGG ID)

Pathway size

# module genes

P

PBonferroni


VEGAS-all

Neurotrophin signaling pathway (hsa04722)

116

10

6.96 × 10-5

0.007

Adipocytokine signaling pathway (hsa04920)

55

6

6.34 × 10-4

0.065

Cell cycle (hsa04110)

114

8

1.56 × 10-3

0.158

Chronic myeloid leukemia (hsa05220)

70

6

2.28 × 10-3

0.227

Vasopressin-regulated water reabsorption (hsa04962)

34

4

4.10 × 10-3

0.405

VEGAS-top

Cell cycle (hsa04110)

114

20

8.61 × 10-8

1.15 × 10-5

Neurotrophin signaling pathway (hsa04722)

116

17

1.14 × 10-5

1.51 × 10-3

Endometrial cancer (hsa05213)

49

8

1.31 × 10-3

0.173

RIG-I-like receptor signaling pathway (hsa04622)

50

8

1.50 × 10-3

0.196

Chronic myeloid leukemia (hsa05220)

70

9

3.69 × 10-3

0.479

minP

T cell receptor signaling pathway (hsa04660)

104

17

2.68 × 10-6

3.43 × 10-4

Neurotrophin signaling pathway (hsa04722)

116

18

2.91 × 10-6

3.69 × 10-4

Antigen processing and presentation (hsa04612)

59

12

8.58 × 10-6

1.08 × 10-3

Chronic myeloid leukemia (hsa05220)

70

13

1.03 × 10-5

1.28 × 10-3

Non-small cell lung cancer (hsa05223)

51

11

1.14 × 10-5

1.42 × 10-3


Jia and Zhao BMC Genomics 2012 13(Suppl 6):S15   doi:10.1186/1471-2164-13-S6-S15

Open Data