Table 2

Analysis results of module gene sets and KEGG pathways by ALIGATOR (PBH <0.2)

Gene set

P

PBH$


VEGAS-all module genes

1.0 × 10-4

0.007

VEGAS-top module genes

1.0 × 10-4

0.007

minP module genes

1.0 × 10-4

0.007

Asthma (hsa05310)

8.0 × 10-4

0.040

Tryptophan metabolism (hsa00380)

1.7 × 10-3

0.068

Gap junction (hsa04540)

2.3 × 10-3

0.076

Cytokine-cytokine receptor interaction (hsa04060)

2.9 × 10-3

0.082

Intestinal immune network for IgA production (hsa04672)

5.5 × 10-3

0.137


$P values were adjusted by Benjamini & Hochberg (BH) method [20].

Jia and Zhao BMC Genomics 2012 13(Suppl 6):S15   doi:10.1186/1471-2164-13-S6-S15

Open Data