Table 2

Core C. pseudotuberculosi s in silic o predicted pan-exoproteome homologous to Mtb's proteins

Corynebacterium pseudotberculosis

Mycobacterium

tuberculosis


pan locus

Reference genome locus_tag

ORF size

% of amino acid alignment's identity

ORF size

locus_tag

Gene name

protein ID

Annotated product


plcpsec106

cpfrc_00104

488

69.10

461

Rv3790

NP_218307.1

oxidoreductase


plcpsec076

cpfrc_00276

371

51.56

357

Rv2678c

hemE

NP_217194.1

uroporphyrinogen decarboxylase


plcppse023

cpfrc_00283

535

52.51

529

Rv0528

NP_215042.1

transmembrane protein


plcppse045

cpfrc_00491

543

73.72

548

Rv3280

accD5

NP_217797.1

propionyl-CoA carboxylase beta chain


plcpsec110

cpfrc_00506

362

69.03

359

Rv3264c

manB

YP_177951.1

D-alpha-D-mannose-1-phosphate guanylyltransferase MANB


plcpsec111

cpfrc_00508

151

51.45

139

Rv3259

NP_217776.1

hypothetical protein


plcpsec113

cpfrc_00705

487

58.67

495

Rv1018c

glmU

NP_215534.1

bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase


plcpsec115

cpfrc_00945

64

63.33

64

Rv1642

rpmI

NP_216158.1

50S ribosomal protein L35


plcppse080

cpfrc_01015

452

57.08

470

Rv0392c

ndhA

NP_214906.1

membrane NADH dehydrogenase


plcppse080

cpfrc_01015

452

58.10

463

Rv1854c

ndh

NP_216370.1

NADH dehydrogenase


plcpsec041

cpfrc_01074

403

62.96

381

Rv1488

NP_216004.1

hypothetical protein


plcpsec119

cpfrc_01121

504

53.71

457

Rv1407

fmu

NP_215923.1

Fmu protein (SUN protein)


plcppse085

cpfrc_01126

417

55.58

418

Rv1391

dfp

NP_215907.1

bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase


plcpsec138

cpfrc_01214

79

68.42

82

Rv2708c

NP_217224.1

hypothetical protein


plcpsec122

cpfrc_01267

683

57.76

558

Rv2752c

NP_217268.1

hypothetical protein


plcpsec124

cpfrc_01393

239

57.83

250

Rv2149c

yfiH

NP_216665.1

hypothetical protein


plcppse104

cpfrc_01424

412

50.38

429

Rv2195

qcrA

NP_216711.1

Rieske iron-sulfur protein QcrA


plcpsec128

cpfrc_01757

313

59.42

322

Rv3579c

NP_218096.1

tRNA/rRNA methyltransferase


plcppse131

cpfrc_01798

480

62.21

491

Rv2443

dctA

NP_216959.1

C4-dicarboxylate-transport transmembrane protein DctA


plcppse165

cpfrc_02038

721

52.00

678

Rv0050

ponA1

YP_177687.1

bifunctional penicillin-binding protein 1A/1B


plcppse174

cpfrc_02102

393

51.41

406

Rv3915

cwlM

YP_178027.1

hydrolase


Related C. pseudotuberculosis's proteins containing at least 50% amino acid identity and 90% alignment size to the Mtb H37Rv's proteins.

Santos et al. BMC Genomics 2012 13(Suppl 5):S6   doi:10.1186/1471-2164-13-S5-S6

Open Data