Table 1

Core C. pseudotuberculosis in silico predicted pan-exoproteome found in the variant in vitro exoproteome

Protein identifier

locus_tag

Gene name

Product

Predicted local sub-cellular

GenBank organism identifier


ADL19972

Cp1002_0064

Hypothetical protein

PSE E

CP001809


ADL20140

Cp1002_0237

slpA

Surface layer protein A

SEC

CP001809


ADL20222

Cp1002_0320

Hypothetical protein

PSE N

CP001809


ADL20288

Cp1002_0388

L,D-transpeptidase catalytic domain, region YkuD

SEC

CP001809


ADL20391

Cp1002_0497

malE

Maltose/maltodextrin transport system substrate-binding protein

PSE E

CP001809


ADL20455

Cp1002_0562

sprT

Trypsin

PSE C

CP001809


ADL20477

Cp1002_0584

cynT

Carbonic anhydrase

PSE E

CP001809


ADL20508

Cp1002_0615

Hypothetical protein

SEC

CP001809


ADL20574

Cp1002_0681

rpfB

Resuscitation-promoting factor RpfB

SEC

CP001809


ADL20656

Cp1002_0766

Hypothetical protein

SEC

CP001809


ADL21028

Cp1002_1144

yceG

Amino deoxychorismate lyase

SEC

CP001809


ADL21239

Cp1002_1362

Hypothetical protein

PSE E

CP001809


ADL21302

Cp1002_1425

ctaC

Cytochrome c oxidase subunit II

PSE C

CP001809


ADL21537

Cp1002_1669

Hypothetical protein

SEC

CP001809


ADL21667

Cp1002_1802

lipY

Secretory lipase

SEC

CP001809


ADL09524

CpC231_0025

pld

Phospholipase D

SEC

CP001829


ADL09532

CpC231_0033

pbpA

Penicillin-binding protein A

SEC

CP001829


ADL09691

CpC231_0196

Hypothetical protein

SEC

CP001829


ADL09697

CpC231_0203

pbpB

Penicillin binding protein transpeptidase

SEC

CP001829


ADL09852

CpC231_0360

oppA1

Oligopeptide-binding protein oppA

PSE E

CP001829


ADL09871

CpC231_0379

Hypothetical protein

SEC

CP001829


ADL09872

CpC231_0380

malE

Maltotriose-binding protein

PSE E

CP001829


ADL09990

CpC231_0503

lytR

Transcriptional regulator lytR

PSE C

CP001829


ADL10248

CpC231_0766

Hypothetical protein

SEC

CP001829


ADL10460

CpC231_0982

ciuA

Iron ABC transporter substrate-binding

PSE E

CP001829


ADL10489

CpC231_1012

yceI

Protein yceI

SEC

CP001829


ADL10626

CpC231_1150

Zinc metallopeptidase

PSE C

CP001829


ADL10663

CpC231_1187

Lipoprotein

PSE E

CP001829


ADL10880

CpC231_1409

pknL

Serine/threonine protein kinase

PSE N

CP001829


ADL11196

CpC231_1737

Corynomycolyl transferase

SEC

CP001829


ADL11213

CpC231_1756

Hypothetical protein

SEC

CP001829


ADL11326

CpC231_1871

Hypothetical protein

PSE N

CP001829


ADL11338

CpC231_1885

Membrane protein

SEC

CP001829


ADL11339

CpC231_1886

Hypothetical protein

SEC

CP001829


ADL11410

CpC231_1959

glpQ

Glycerophosphoryl diester phosphodiesterase

PSE E

CP001829


The 35 proteins listed in this table were not found in the experimental main in vitro exoproteome [47; 48] but were found in the in silico predicted pan-exoproteome of all five C. pseudotuberculosis strains.

Santos et al. BMC Genomics 2012 13(Suppl 5):S6   doi:10.1186/1471-2164-13-S5-S6

Open Data