Table 1

PtPAL (1-5) de novo transcriptome assemblies of P.taeda

MIRA1A

Uniscript2

Uniscript length3

Total seq4


PAL1/MIRA

P.taeda.JGI_rep_c1829

2081

295

PAL2/MIRA

P.taeda.JGI_rep_c1015

2660

392

PAL3/MIRA

P.taeda.JGI_rep_c9006

2826

142

PAL4/MIRA

P.taeda.JGI_rep_c4552

2474

155

PAL5/MIRA

P.taeda.JGI_rep_c10177

2269

62


Newbler1B

Uniscript2

Uniscript

length3

Total seq4


PAL1/Newb

contig57512

3573

2924

PAL2/Newb

isotig35091

3022

606

PAL3/Newb

isotig22550

3110

506

PAL4/Newb

isotig41305

2538

279

PAL5/Newb

isotig35702

2278

87


SeqMan NGen1C

Uniscript2

Uniscript length3

Total seq4


PAL1/NGen

Contig347

3773

2746

PAL2/NGen

Contig13311

2889

560

PAL3/NGen

Contig5954

2370

223

PAL4/NGen

Contig26398

1798

154

PAL5/NGen

Contig50748

2277

75


1A: miraEST (Mira) Version 3.0.5, 1B: Newbler Version 2.3, 1C: SeqMan NGen Version 3.0 (DNAStar), 2: Contig name, 3: Contig lengths, and 4: numbers of sequences assembled to form a contig.

Bagal et al. BMC Genomics 2012 13(Suppl 3):S1   doi:10.1186/1471-2164-13-S3-S1

Open Data